Installation

Linux, MacOS

In an environment with python>=3.7:

pip install figeno

Warning

If pip fails to install pysam, try installing it through conda: conda install pysam -c bioconda

Windows

Figeno has some dependencies which do not officially support Windows (pysam, pybigwig), so it is difficult to install as a python package on Windows. To make it easier for windows users to use figeno, we provide windows binaries for figeno. Download figeno_windows.zip from https://github.com/CompEpigen/figeno/releases/latest, extract it, and start the figeno GUI by double-clicking on figene.exe.

Building from source

It is easier to install figeno from pip or with the windows binaries. If you want to build figeno from the source code and want to use the GUI, you will first need to build the react app, which requires nodejs to be installed (giving you access to the npm command), and then install the python package.

cd figeno/gui
npm install
npm run build
cd ../..
pip install .