Welcome to figeno’s documentation!

Figeno is a tool for generating FIgures for GENOmics.

Features

• Large collection of tracks (bigwig, HiC, alignments, copy number, SV…)

• Multi-region figures

• Graphical user interface

• Highlight regions of interest

• Output figures in svg, pdf, or png

Table of contents

• Installation
  • Linux, MacOS
  • Windows
  • Building from source
• Usage
  • Basics
  • Command line interace (CLI)
  • Graphical user interface (GUI)
  • Python API
• Describing the figure
  • General
  • Output
  • Regions
  • Highlights
  • Tracks
• Examples
  • Templates
  • Other examples